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I would not get a 2014 Mini. But if you do, you can get an adapter, Thunderbolt to FW. Check eBay to see if you can get a 2012 Mini instead.
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there's nothing wrong with the 2014 model, but there isn't much difference between the two UNLESS you go for a PCIe SSD option. Really fast, REALLY expensive. Warranty is an issue of course...
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I would not get a 2012 mini.
Are you sure your external boot is FW only? Might have both FW and USB.
Did you make your FW drive? DIY? or was it bought prebuilt? If a DIY, pull the drive and put in USB case, super cheap. In fact, thats prob what I do anyway... but depends on what you buy and how you plan to setup...
To expand on Hal post -- I would be OK with a Fusion drive -- or booting from an external USB SSD. But the internal options are faster...
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It's an OWC On-The-Go FW800/USB 3.0 case and the "open thin port" is the USB 3.0 port. Whichever mini (2012 or 2014) you get, just plug the drive in using that port.
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Open port might be a FW800 port?
That's an OWC case--what's the model number?
If that's a SATA drive inside, you could just buy a $15 USB 3.0 case, and move the HD to the USB 3.0 case for the transfer. BACK UP THE FW DRIVE FIRST!!!!